Samples
=======

.. currentmodule:: pylluminator.samples

.. autoclass:: Samples
   :members:
   :show-inheritance:
   :inherited-members:                         

   
   
   .. rubric:: Methods

   .. autosummary::
   
      ~Samples.__init__
      ~Samples.add_annotation_info
      ~Samples.batch_correction
      ~Samples.calculate_betas
      ~Samples.cg_probes
      ~Samples.ch_probes
      ~Samples.controls
      ~Samples.copy
      ~Samples.drop_samples
      ~Samples.dye_bias_correction
      ~Samples.dye_bias_correction_l
      ~Samples.dye_bias_correction_nl
      ~Samples.get_betas
      ~Samples.get_m_values
      ~Samples.get_mean_ib_intensity
      ~Samples.get_nb_probes_per_chr_and_type
      ~Samples.get_negative_controls
      ~Samples.get_normalization_controls
      ~Samples.get_probes
      ~Samples.get_probes_with_probe_type
      ~Samples.get_signal_df
      ~Samples.get_total_ib_intensity
      ~Samples.has_betas
      ~Samples.ib
      ~Samples.ib_green
      ~Samples.ib_red
      ~Samples.impute_betas
      ~Samples.infer_type1_channel
      ~Samples.lift_over_probe_annotations
      ~Samples.load
      ~Samples.mask_control_probes
      ~Samples.mask_non_cg_probes
      ~Samples.mask_non_unique_probes
      ~Samples.mask_probes_by_names
      ~Samples.mask_quality_probes
      ~Samples.mask_snp_probes
      ~Samples.mask_xy_probes
      ~Samples.merge_samples_by
      ~Samples.meth
      ~Samples.noob_background_correction
      ~Samples.oob
      ~Samples.oob_green
      ~Samples.oob_red
      ~Samples.poobah
      ~Samples.remove_probes_suffix
      ~Samples.reset_betas
      ~Samples.reset_poobah
      ~Samples.save
      ~Samples.scrub_background_correction
      ~Samples.snp_probes
      ~Samples.subset
      ~Samples.type1
      ~Samples.type1_green
      ~Samples.type1_red
      ~Samples.type2
      ~Samples.unmeth
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~Samples.nb_probes
      ~Samples.nb_samples
      ~Samples.probe_ids
      ~Samples.sample_label_name
      ~Samples.sample_labels
   
   

   Methods and attributes detail
   -----------------------------

   .. automethod:: __init__