betas_dendrogram

pylluminator.visualizations.betas_dendrogram(samples: Samples, title: None | str = None, color_column: str | None = None, figsize: tuple[float, float] = (10, 7), cmap_name: str = 'Spectral_r', custom_sheet: DataFrame | None = None, apply_mask: bool = True, save_path: None | str = None) → None

Plot dendrogram of samples according to their beta values distances.

Parameters:

• samples (Samples) – samples to plot

• title (str | None) – custom title for the plot. Default: None

• color_column (str) – name of a Sample Sheet column used to give samples from the same group the same color. Default: None

• figsize (tuple) – size of the plot. Default: (10, 7)

• apply_mask (bool) – True removes masked probes from betas, False keeps them. Default: True

• custom_sheet (pandas.DataFrame | None) – a sample sheet to use. By default, use the samples’ sheet. Useful if you want to filter the samples to display. Default: None

• cmap_name (str) – name of the matplotlib color map to use. Default: Spectral_r

• save_path (str | None) – if set, save the graph to save_path. Default: None

Returns:

None