read_idat

Functions to parse .idat files.

Most of this code comes from https://github.com/FoxoTech/methylprep

Functions

bytes_to_int(input_bytes[, signed])	Returns the integer represented by the given array of bytes.
get_file_object(filepath)	Get an opened file object.
npread(file_like, dtype, n)	Parses a binary file multiple times, allowing for control if the file ends prematurely. This replaces
read_and_reset(inner)	Decorator that resets a file-like object back to the original position after the function has been called.
read_byte(infile)	Converts a single byte to an integer value.
read_char(infile, num_bytes)	Converts an array of bytes to a string.
read_int(infile)	Converts a four-byte element to an integer value.
read_long(infile)	Converts an eight-byte element to an integer value.
read_short(infile)	Converts a two-byte element to an integer value.
read_string(infile)	Converts an array of bytes to a string.

Classes

IdatDataset(filepath[, bit])	Validates and parses an Illumina IDAT file.
IdatHeaderLocation(*values)	Unique IntEnum defining constant values for byte offsets of IDAT headers.
IdatSectionCode(*values)	Unique IntEnum defining constant values for byte offsets of IDAT headers.