cnv

Functions to compute the Copy Number Variation (CNV), ie detect changes in the number of copies on a particular region of the genome, and splits the genome in segments with similar CNV.

Functions

copy_number_segmentation(samples, cnv_df, ...)	With the output dataframe of copy_number_variation, group the genome in segments with similar CNV using the Circular Binary Segmentation (CBS) algorithm.
copy_number_variation(samples[, ...])	Perform copy number variation (CNV).
get_normalization_samples(annotation)	Read from the package's data normalization samples data, depending on the array type.