ArrayType

class pylluminator.annotations.ArrayType(value, names=<not given>, *values, module=None, qualname=None, type=None, start=1, boundary=None)

Bases: Enum

Names of the different array types supported.

Possible values are : HUMAN_27K, HUMAN_450K, HUMAN_MSA, HUMAN_EPIC, HUMAN_EPIC_PLUS, HUMAN_EPIC_V2, MOUSE_MM285, MAMMAL_40

Methods

is_human()

Returns True if the array type is not a mouse array.

Attributes

HUMAN_27K	Human Methylation 27K, CpG sites
HUMAN_450K	Human Methylation 450K, CpG sites
HUMAN_MSA	Human Methylation MSA (>450K CpG sites)
HUMAN_EPIC	Human Methylation EPIC (around 850K CpG sites)
HUMAN_EPIC_PLUS	Human Methylation EPIC+ (around 850K CpG sites + double coverage of some probes for qc)
HUMAN_EPIC_V2	Human Methylation EPIC V2 (around 950K CpG sites)
MOUSE_MM285	Mouse Methylation, 285K CpG sites
MAMMAL_40	Mammalian array, 40K CpG sites

Methods and attributes detail

__init__(*args, **kwds)

HUMAN_27K = 'HM27'

Human Methylation 27K, CpG sites

HUMAN_450K = 'HM450'

Human Methylation 450K, CpG sites

HUMAN_EPIC = 'EPIC'

Human Methylation EPIC (around 850K CpG sites)

HUMAN_EPIC_PLUS = 'EPIC+'

Human Methylation EPIC+ (around 850K CpG sites + double coverage of some probes for qc)

HUMAN_EPIC_V2 = 'EPICv2'

Human Methylation EPIC V2 (around 950K CpG sites)

HUMAN_MSA = 'MSA'

Human Methylation MSA (>450K CpG sites)

MAMMAL_40 = 'Mammal40'

Mammalian array, 40K CpG sites

MOUSE_MM285 = 'MM285'

Mouse Methylation, 285K CpG sites

is_human()

Returns True if the array type is not a mouse array.