merge_alt_chromosomes

pylluminator.utils.merge_alt_chromosomes(chromosome_id: str | int | list | Series) → list[str] | str

Merges the alternative chromosomes with their respective reference chromosome, e.g. 22_KI270928V1_ALT-> 22. If given an unconventional format (None, wrong type) or an unrecognized string, return *

Parameters:

chromosome_id (str | int | list[str] | list[int] | pandas.Series) – chromosome ID(s) to merge

Returns:

merged ID(s)

Return type:

list[str] | str