dm

Functions used to compute DMR (Differentially Methylated Regions) and DMP (Differentially Methylated Probes).

Functions

get_dmp(samples, formula[, reference_value, ...])	Find Differentially Methylated Probes (DMP) by fitting an Ordinary Least Square model (OLS) for each probe, following the given formula.
get_dmr(samples, dmps, contrast[, ...])	Find Differentially Methylated Regions (DMR) based on euclidian distance between beta values
get_top_dmrs(dmrs, annotation, contrast[, ...])